Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cell
sample type
ES cell

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were isolated by homogenization in hypotonic buffer and then resuspended in ChIP buffer for sonication. Sonication conditions were titrated to achieve sufficient fragmentation (mean fragment size 500 bp) while avoiding degradation of p300 protein. ChIP-seq libraries were prepared with KAPA Hyper Prep Kit (Kapa Biosystems)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
19411758
Reads aligned (%)
59.3
Duplicates removed (%)
17.5
Number of peaks
52160 (qval < 1E-05)

mm9

Number of total reads
19411758
Reads aligned (%)
59.2
Duplicates removed (%)
17.6
Number of peaks
52261 (qval < 1E-05)

Base call quality data from DBCLS SRA