Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Med1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mESC
treatment medium
Serum LIF
chip antibody
anti-Med1, Bethyl Laboratories A300-793A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were constructed with the NEBNext ChIP-seq library prep kit following the manufacturer’s recommended protocol (New England Biolabs, Ipswich, MA, USA).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
14976537
Reads aligned (%)
91.7
Duplicates removed (%)
7.7
Number of peaks
189 (qval < 1E-05)

mm9

Number of total reads
14976537
Reads aligned (%)
91.6
Duplicates removed (%)
7.9
Number of peaks
182 (qval < 1E-05)

Base call quality data from DBCLS SRA