Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NOTCH1

Cell type

Cell type Class
Neural
Cell type
GSC8
NA
NA

Attributes by original data submitter

Sample

source_name
NICD_GSC8Per
cell line
Patient-derived neurosphere line GSC8
drug treatment
chronic 1 µM dasatinib
chip-antibody
cleaved Notch1 (Val1744) (CST, 4147, lot 4)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
19567672
Reads aligned (%)
98.9
Duplicates removed (%)
0.2
Number of peaks
1129 (qval < 1E-05)

hg38

Number of total reads
19567672
Reads aligned (%)
99.0
Duplicates removed (%)
0.2
Number of peaks
1094 (qval < 1E-05)

Base call quality data from DBCLS SRA