Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
EPS, Timepoint 30
cell line
C2C12
treatment
EPS
time
30 min
replicate
2

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
DNA was isolated with AllPrep DNA/RNA/miRNA universal kit (Qiagen, Germantown, MD, USA) according to the manufacturer’s instructions. Genomic DNA was bisulfite-converted using EZ DNA Methylation-Lightning™ Kit (Zymo Research Corp, CA, USA) according to the manufacturer’s instructions. Bisulfite primers were designed to span the promoter region of Ppard, Ccnd1, and Nr4a3 genes within -3000 to +2000 base pairs relative to transcriptional start site (TSS) (Table 1, Figure 3) using MethPrimer program (Li and Dahiya, 2002)

Sequencing Platform

instrument_model
Illumina MiSeq

mm10

Number of total reads
770373
Reads aligned (%)
69.7
Coverage rate (×)
0.1
Number of hyper MRs
1012 (qval < 1E-05)

mm9

Number of total reads
770373
Reads aligned (%)
69.6
Coverage rate (×)
0.1
Number of hyper MRs
1009 (qval < 1E-05)

Base call quality data from DBCLS SRA