Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
A-MuLV transformed pro-B cells (Ebf1fl/fl;RERTCre), 2μM 4-hydroxy-tamoxifen (4-OHT) treated
cell type
A-MuLV transformed pro-B cells (Ebf1fl/fl;RERTCre)
strain
C57BL/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with formaldehyde, lysed and DNA was fragmented into pieces of average 300bp by sonication. Chromatin was precipitated with a specific antibody and protein A-coupled sepharose beads. After elution from the beads, chromatin was decrosslinked and purified via QIAquick PCR Purification Kit according to the manufacturer's manual. Library preparation for ChIP analysis was performed with the NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (Catalog #E7370) according to the manufacturer’s protocol. No size selection was used and amplification was performed using 10 PCR cycles.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
45225167
Reads aligned (%)
92.5
Duplicates removed (%)
28.4
Number of peaks
401 (qval < 1E-05)

mm9

Number of total reads
45225167
Reads aligned (%)
92.2
Duplicates removed (%)
29.2
Number of peaks
409 (qval < 1E-05)

Base call quality data from DBCLS SRA