SRX220960
GSM1072711: CAL-1-E2-2-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF4

Cell type

Cell type Class
Blood
Cell type
CAL-1
NA
NA

Attributes by original data submitter

Sample

source_name
CAL-1 cell line
cell line
CAL-1
antibody
E2-2 Ab is a rabbit monoclonal Ab generated in Dr. Louis Staudt's lab

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32331118
Reads aligned (%)
48.8
Duplicates removed (%)
4.3
Number of peaks
7574 (qval < 1E-05)

hg19

Number of total reads
32331118
Reads aligned (%)
48.4
Duplicates removed (%)
5.6
Number of peaks
7468 (qval < 1E-05)

Base call quality data from DBCLS SRA