SRX220959
GSM1072710: CAL-1-Mtg16-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBFA2T3

Cell type

Cell type Class
Blood
Cell type
CAL-1
NA
NA

Attributes by original data submitter

Sample

source_name
CAL-1 cell line
cell line
CAL-1
antibody
Mtg16 is a goat polyclonal Ab from santa cruz biotech (C20)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26927990
Reads aligned (%)
53.1
Duplicates removed (%)
3.0
Number of peaks
882 (qval < 1E-05)

hg19

Number of total reads
26927990
Reads aligned (%)
52.6
Duplicates removed (%)
4.4
Number of peaks
836 (qval < 1E-05)

Base call quality data from DBCLS SRA