SRX2207929
GSM2333826: CSA WT 0h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERCC8

Cell type

Cell type Class
Epidermis
Cell type
CS1AN
NA
NA

Attributes by original data submitter

Sample

source_name
CS1AN+CSBwt
cell type
dermal fibroblasts, immortolized
chip antibody
CSA (Abcam, ab137033)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA-containing complexes were isolated with antibody. Diagenode MicroPlex Library Preparation kit v2

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
59152442
Reads aligned (%)
98.7
Duplicates removed (%)
21.0
Number of peaks
1572 (qval < 1E-05)

hg19

Number of total reads
59152442
Reads aligned (%)
97.7
Duplicates removed (%)
23.5
Number of peaks
1745 (qval < 1E-05)

Base call quality data from DBCLS SRA