Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
Erythroid Cells
MeSH Description
The series of cells in the red blood cell lineage at various stages of differentiation.

Attributes by original data submitter

Sample

source_name
Erythroid
donor id
Don002
cell type
Erythroid
origin cell_line
E14TG2a.IV mouse ES cells
strain
129/Ola
differentiation day
Day 7
antibody
abcam, ab1546769
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7832130
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were grown, treated and processed as described in the Methods section of the paper. The NEBNext Ultra II DNA Library Prep Kit (New England Biolabs: NEB: 7645S/L) was used to prepare indexed sequencing libraries following the manufacturer supplied protocol. PCR amplification was performed for 7-11 cycles (depending on input DNA concentration) using NEBNext Mulitplex Oligos (New England Biolabs: E7335S/L and E7500S/L). Indexed sample concentration was quantified using the KAPA Library Quantification Complete Kit (Universal)(Roche: KK4824). Samples were pooled as a 2 nM or 4 nM library and sequenced with a high-Output v2 75 cycle kits on the Illumina NextSeq 500 platform.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
90200497
Reads aligned (%)
83.5
Duplicates removed (%)
7.8
Number of peaks
25010 (qval < 1E-05)

hg19

Number of total reads
90200497
Reads aligned (%)
82.8
Duplicates removed (%)
8.0
Number of peaks
24500 (qval < 1E-05)

Base call quality data from DBCLS SRA