Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic beta cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic beta cell
tissue
mouse pancreatic beta cells
age
16 months
genotype
WT
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq: Sonicated chromatin from Min6 cells or EndoC cells was immunoprecipitated with rabbit anti Pax6 (Biolegend) and that of sorted pancreatic beta cells using anti-H3K9Ac antibody. ChIP-Seq: Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
64796875
Reads aligned (%)
98.5
Duplicates removed (%)
16.3
Number of peaks
739 (qval < 1E-05)

mm9

Number of total reads
64796875
Reads aligned (%)
98.2
Duplicates removed (%)
16.2
Number of peaks
788 (qval < 1E-05)

Base call quality data from DBCLS SRA