Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX220308
GSM1071830: Ovary shWhite Rep2 PolII; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
source_name
ovary shWhite PolII
biomaterial_provider
Bloomington Drosophila Stock Center
genotype/variation
shWhite x nos-gal4; control knockdown of a protein irrelevant to the system we studied (White)
tissue
Ovaries
chip-seq antibody
Anti-RNA polymerase II CTD repeat YSPTSPS (phospho S) antibody [clone 4H8]
chip-seq antibody vendor
Abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
8084398
Reads aligned (%)
82.1
Duplicates removed (%)
60.2
Number of peaks
3267 (qval < 1E-05)
dm3
Number of total reads
8084398
Reads aligned (%)
82.2
Duplicates removed (%)
59.3
Number of peaks
3557 (qval < 1E-05)
Base call quality data from
DBCLS SRA