SRX220063
GSM1071298: IgG PR infected; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
primary HUVECs
cell type
endothelial cells
treatment
PR infected
ChIP
PR

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
17433554
Reads aligned (%)
82.2
Duplicates removed (%)
6.5
Number of peaks
513 (qval < 1E-05)

hg38

Number of total reads
17433554
Reads aligned (%)
83.6
Duplicates removed (%)
5.7
Number of peaks
689 (qval < 1E-05)

Base call quality data from DBCLS SRA