SRX2200432
GSM2332771: H3K36me3 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal cells
NA
NA

Attributes by original data submitter

Sample

source_name
intestinal cells
tissue
intestine
genotype
setd2f/f
age
6 week
strain
C57BL/6
chip antibody
H3K36me3 (Abcam, ab9050)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei. library construction protocol not provided.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14060891
Reads aligned (%)
89.7
Duplicates removed (%)
11.4
Number of peaks
118 (qval < 1E-05)

mm9

Number of total reads
14060891
Reads aligned (%)
89.6
Duplicates removed (%)
11.2
Number of peaks
85 (qval < 1E-05)

Base call quality data from DBCLS SRA