SRX21879462
GSM7804630: KMS12BM.EV.IRF4; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF4

Cell type

Cell type Class
Blood
Cell type
KMS-12-BM
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
multiple myeloma
tissue
multiple myeloma
cell line
KMS12BM
antibody
IRF4 (Santa Cruz, sc-6059, k1209)
treatment
empty vector
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7804630
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin from approximately 2 × 10e7 cells were used for each ChIP-Seq reaction ChIPed DNA fragments were blunt-ended, ligated to adaptors.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28320797
Reads aligned (%)
98.6
Duplicates removed (%)
1.5
Number of peaks
9048 (qval < 1E-05)

hg19

Number of total reads
28320797
Reads aligned (%)
97.8
Duplicates removed (%)
2.9
Number of peaks
9168 (qval < 1E-05)

Base call quality data from DBCLS SRA