Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Klf9

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
HT22[BirA/FLBIO-Klf9]
stably transfected construct
pSV40-zeo-BirA-V5/pEF-FLBIO-Klf9

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% paraformaldehyde and 25 mM dithiobis(succinimydl propionate) and lysed with sodium dodecyl sulfate (SDS) buffer. Chromatin was sheared with a Covaris sonicator to 200-1000 bp fragments and protein-DNA complexes were isolated with Libraries were constructed using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
23464568
Reads aligned (%)
88.2
Duplicates removed (%)
31.7
Number of peaks
313 (qval < 1E-05)

mm9

Number of total reads
23464568
Reads aligned (%)
88.0
Duplicates removed (%)
31.8
Number of peaks
320 (qval < 1E-05)

Base call quality data from DBCLS SRA