Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
HT22[BirA]
stably transfected construct
pSV40-zeo-BirA-V5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% paraformaldehyde and 25 mM dithiobis(succinimydl propionate) and lysed with sodium dodecyl sulfate (SDS) buffer. Chromatin was sheared with a Covaris sonicator to 200-1000 bp fragments and protein-DNA complexes were isolated with Libraries were constructed using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27816157
Reads aligned (%)
93.1
Duplicates removed (%)
33.6
Number of peaks
348 (qval < 1E-05)

mm9

Number of total reads
27816157
Reads aligned (%)
92.8
Duplicates removed (%)
33.6
Number of peaks
373 (qval < 1E-05)

Base call quality data from DBCLS SRA