SRX218285
GSM1066041: stimulated Smc3 CHIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD43- B cells extracted from spleen
strain
C57BL/6
chip antibody
Smc3 (Abcam ref: ab9263 lot: GR81379-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
77424591
Reads aligned (%)
98.6
Duplicates removed (%)
32.2
Number of peaks
5941 (qval < 1E-05)

mm9

Number of total reads
77424591
Reads aligned (%)
98.3
Duplicates removed (%)
32.1
Number of peaks
5852 (qval < 1E-05)

Base call quality data from DBCLS SRA