SRX218230
GSM1065724: Input sample mitotic K562; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
cell cycle phase
arrested to mitosis
treatment
30 min at 42C
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40690535
Reads aligned (%)
99.2
Duplicates removed (%)
4.5
Number of peaks
1306 (qval < 1E-05)

hg19

Number of total reads
40690535
Reads aligned (%)
98.1
Duplicates removed (%)
6.8
Number of peaks
1346 (qval < 1E-05)

Base call quality data from DBCLS SRA