SRX218222
GSM1065716: IgG heat-treated cycling K562; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 cells
cell line
K562 cells
cell cycle phase
freely cycling
treatment
30 min at 42C
chip antibody
IgG (sc-2027, Santa Cruz, Lot#A2412)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29080785
Reads aligned (%)
96.0
Duplicates removed (%)
45.6
Number of peaks
708 (qval < 1E-05)

hg19

Number of total reads
29080785
Reads aligned (%)
95.2
Duplicates removed (%)
47.5
Number of peaks
972 (qval < 1E-05)

Base call quality data from DBCLS SRA