Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

source_name

WT_brain_NSC_ChIRP-seq

strain

C57BL/6J

genotype/variation

wild type

age

adult

tissue

brain

oligo set

custom NSC oligos

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

44733001

Reads aligned (%)

69.1

Duplicates removed (%)

78.4

Number of peaks

371 (qval < 1E-05)

mm9

Number of total reads

44733001

Reads aligned (%)

68.8

Duplicates removed (%)

78.5

Number of peaks

397 (qval < 1E-05)