Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAF3

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 cells
cell type
colorectal carcinoma
passages
15-18
cell line
HCT116 cells
chip antibody
Polyclonal antisera raised against amino acid residues 290-389 of the human TAF3 protein (Strategic Diagnostics,SDIX)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
26341276
Reads aligned (%)
80.4
Duplicates removed (%)
13.5
Number of peaks
16904 (qval < 1E-05)

hg38

Number of total reads
26341276
Reads aligned (%)
82.0
Duplicates removed (%)
12.5
Number of peaks
16754 (qval < 1E-05)

Base call quality data from DBCLS SRA