Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
strain
CAST/EiJ

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Qiagen Dneasy Kit TruSeq DNA LT Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
195313749
Reads aligned (%)
88.2
Coverage rate (×)
4.8
Number of hyper MRs
337302 (qval < 1E-05)

mm9

Number of total reads
195313749
Reads aligned (%)
88.6
Coverage rate (×)
4.8
Number of hyper MRs
337017 (qval < 1E-05)

Base call quality data from DBCLS SRA