Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
strain
C57BL/6J

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Qiagen Dneasy Kit TruSeq DNA LT Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
186472312
Reads aligned (%)
86.7
Coverage rate (×)
4.5
Number of hyper MRs
208357 (qval < 1E-05)

mm9

Number of total reads
186472312
Reads aligned (%)
87.0
Coverage rate (×)
4.6
Number of hyper MRs
207893 (qval < 1E-05)

Base call quality data from DBCLS SRA