SRX2173450
ChIP-seq of RNApol2 pulldown DNA from Differentiated myoblast( C2C12 mouse)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

strain
C3H
age
Immortal cell line
sex
not applicable
tissue
not applicable
cell_line
C2C12
cell_description
Myoblast cell line derived from thigh muscle of C3H mice after crush injury
Replicate
1
growth_protocol
Differentiation culture
Sample_run
ChIP - Pull down
chip antibody
Pol II (N-20)
Antibody vendor
SANTA CRUZ BIOTECHNOLOGY, INC.
catalog number
sc-899

Sequenced DNA Library

library_name
MT_RNApolII_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29202722
Reads aligned (%)
27.2
Duplicates removed (%)
6.3
Number of peaks
162 (qval < 1E-05)

mm9

Number of total reads
29202722
Reads aligned (%)
27.2
Duplicates removed (%)
6.3
Number of peaks
134 (qval < 1E-05)

Base call quality data from DBCLS SRA