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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: C2C12
ATCC
MeSH
RIKEN BRC
SRX2173449
ChIP-seq of RNApol2 pulldown DNA from Quiescent myoblast( C2C12 mouse)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS
Attributes by original data submitter
Sample
strain
C3H
age
Immortal cell line
sex
not applicable
tissue
not applicable
cell_line
C2C12
cell_description
Myoblast cell line derived from thigh muscle of C3H mice after crush injury
Replicate
2
growth_protocol
Quiescene inducing culture
Sample_run
ChIP - Pull down
chip antibody
Pol II (N-20)
Antibody vendor
SANTA CRUZ BIOTECHNOLOGY, INC.
catalog number
sc-899
Sequenced DNA Library
library_name
G0_RNApolII_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 1000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
32526126
Reads aligned (%)
85.8
Duplicates removed (%)
85.9
Number of peaks
1614 (qval < 1E-05)
mm9
Number of total reads
32526126
Reads aligned (%)
85.7
Duplicates removed (%)
85.7
Number of peaks
1552 (qval < 1E-05)
Base call quality data from
DBCLS SRA