SRX2172385
GSM2318996: ba d7 k27m3 re2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
C3H/10T1/2
NA
NA

Attributes by original data submitter

Sample

source_name
C3H10T1/2 cells
strain
C3H
tissue
mesenchymal stem cell line
chip-antibody
07-449 (lot#2064519)
day of differentiation
day7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided by submitter none provided by submitter

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22563485
Reads aligned (%)
87.8
Duplicates removed (%)
15.5
Number of peaks
5080 (qval < 1E-05)

mm9

Number of total reads
22563485
Reads aligned (%)
87.7
Duplicates removed (%)
15.6
Number of peaks
5369 (qval < 1E-05)

Base call quality data from DBCLS SRA