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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: C3H/10T1/2
ATCC
MeSH
RIKEN BRC
SRX2172383
GSM2318994: ba d7 k4m3 re2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Embryonic fibroblast
Cell type
C3H/10T1/2
NA
NA
Attributes by original data submitter
Sample
source_name
C3H10T1/2 cells
strain
C3H
tissue
mesenchymal stem cell line
chip-antibody
ab8580 (lot#GR95388-1)
day of differentiation
day7
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided by submitter none provided by submitter
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
19659954
Reads aligned (%)
88.1
Duplicates removed (%)
33.9
Number of peaks
21125 (qval < 1E-05)
mm9
Number of total reads
19659954
Reads aligned (%)
87.9
Duplicates removed (%)
33.9
Number of peaks
21191 (qval < 1E-05)
Base call quality data from
DBCLS SRA