SRX2172382
GSM2318993: ba d0 k4m3 re2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
C3H/10T1/2
NA
NA

Attributes by original data submitter

Sample

source_name
C3H10T1/2 cells
strain
C3H
tissue
mesenchymal stem cell line
chip-antibody
ab8580 (lot#GR95388-1)
day of differentiation
day 0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
none provided by submitter none provided by submitter

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22297154
Reads aligned (%)
88.3
Duplicates removed (%)
21.0
Number of peaks
25388 (qval < 1E-05)

mm9

Number of total reads
22297154
Reads aligned (%)
88.1
Duplicates removed (%)
21.1
Number of peaks
25438 (qval < 1E-05)

Base call quality data from DBCLS SRA