SRX217117
GSM1064501: HU WT Brca1 rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Brca1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Splenic B Cells
ChIP
Brca1
cell type
In vitro activated B Cells
strain
129/Sv x C57BL/6
genotype
wildtype
growth duration
28 hr
chip antibody
mouse monoclonal raised against mouse BRCA1 (160-300 amino acids)
treatment protocol
10 mM hydroxyurea for 6 hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20192501
Reads aligned (%)
66.1
Duplicates removed (%)
29.6
Number of peaks
991 (qval < 1E-05)

mm9

Number of total reads
20192501
Reads aligned (%)
66.0
Duplicates removed (%)
29.9
Number of peaks
1089 (qval < 1E-05)

Base call quality data from DBCLS SRA