SRX216358
GSM1062354: Double negative 3 (DN3-K27me3 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
DN3
strain
C57BL/6J
cell type
double negative 3
tissue
Thymus
chip anibody
Anti-H3K27me3 antibody (Active Motif)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22842976
Reads aligned (%)
54.2
Duplicates removed (%)
13.3
Number of peaks
817 (qval < 1E-05)

mm9

Number of total reads
22842976
Reads aligned (%)
54.1
Duplicates removed (%)
13.5
Number of peaks
852 (qval < 1E-05)

Base call quality data from DBCLS SRA