SRX216350
GSM1062346: Early thymic precursors (ETP)-K4me3 micro-ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Others
Cell type
Thymic precursors
NA
NA

Attributes by original data submitter

Sample

source_name
ETP
strain
C57BL/6J
cell type
early thymic precursors
tissue
Thymus
chip anibody
Anti-H3K4me3 antibody (Active Motif)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19747565
Reads aligned (%)
95.0
Duplicates removed (%)
22.6
Number of peaks
2651 (qval < 1E-05)

mm9

Number of total reads
19747565
Reads aligned (%)
94.8
Duplicates removed (%)
22.7
Number of peaks
2366 (qval < 1E-05)

Base call quality data from DBCLS SRA