SRX216349
GSM1062345: Common lymphoid progenitors (CLP)-K4me3 micro-ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Common lymphoid progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
CLP
strain
C57BL/6J
cell type
common lymphoid progenitors
tissue
Bone marrow
chip anibody
Anti-H3K4me3 antibody (Active Motif)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20558460
Reads aligned (%)
94.9
Duplicates removed (%)
30.4
Number of peaks
632 (qval < 1E-05)

mm9

Number of total reads
20558460
Reads aligned (%)
94.6
Duplicates removed (%)
30.5
Number of peaks
658 (qval < 1E-05)

Base call quality data from DBCLS SRA