Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
Hippocampus
MeSH Description
A curved elevation of GRAY MATTER extending the entire length of the floor of the TEMPORAL HORN of the LATERAL VENTRICLE (see also TEMPORAL LOBE). The hippocampus proper, subiculum, and DENTATE GYRUS constitute the hippocampal formation. Sometimes authors include the ENTORHINAL CORTEX in the hippocampal formation.

Attributes by original data submitter

Sample

source_name
Veh
strain
C57/DBA F1 hybrid
gender
male
age
3 month
treatment group
vehicle; DMSO/Saline solution (1:4)
tissue
hippocampus

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
8136769
Reads aligned (%)
98.4
Duplicates removed (%)
12.9
Number of peaks
388 (qval < 1E-05)

mm9

Number of total reads
8136769
Reads aligned (%)
98.1
Duplicates removed (%)
13.1
Number of peaks
384 (qval < 1E-05)

Base call quality data from DBCLS SRA