Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Epidermis
Cell type
MK1
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse keratinocyte cell-line 1
cell line
MK1
cell type
keratinocyte

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was extracted from mouse keratinocyte cells (MK1 and MK2) using a low SDS shearing kit (Diagenode: C01020010). Lysates were sonicated with a Bioruptor for 30-40 min. Ips were carried out with Indirect ChIP protocol using 4A4 antibody for p63 and histone antibodies from Diagenode. Libraries were prepared using ThruPLEX DNA-seq kits from Rubicon Genomics. The samples were then 50 bp single-end sequenced on an Illumina HiSeq 2500.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
70421923
Reads aligned (%)
98.4
Duplicates removed (%)
18.1
Number of peaks
23258 (qval < 1E-05)

mm9

Number of total reads
70421923
Reads aligned (%)
98.2
Duplicates removed (%)
18.0
Number of peaks
23313 (qval < 1E-05)

Base call quality data from DBCLS SRA