Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Embryo

Cell type

Facial prominence

NA

NA

Sample

age

10.5 day

dev stage

embryonic

donor ID

ENCDO956IXV

tissue

embryonic facial prominence

sex

pooled male and female

health state

healthy

sample type

tissue

lab

Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/18580e80-0907-4258-a412-46bcc37bd040/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol%20MicroChIP.pdf general protocol: https://www.encodeproject.org/documents/1fcaab50-6ca0-4778-88cb-5f6b85170d21/@@download/attachment/Ren%20Lab%20ENCODE%20Tissue%20Fixation%20and%20Sonication%20Protocol%20MicroChIP.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

mm10

Number of total reads

77015608

Reads aligned (%)

99.2

Duplicates removed (%)

9.8

Number of peaks

19402 (qval < 1E-05)

mm9

Number of total reads

77015608

Reads aligned (%)

99.2

Duplicates removed (%)

9.9

Number of peaks

19553 (qval < 1E-05)