Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

age
unknown
dev stage
unknown
donor ID
ENCDO015AAA
cell type
ES-E14
sex
male
health state
unknown
sample type
stem cell
lab
Bing Ren, UCSD

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/52452d9f-2a60-47c5-8707-e27665be2d06/@@download/attachment/Ren_Chip_Protocol_v090113.pdf general protocol: https://www.encodeproject.org/documents/bcbd02f1-c8e7-47db-8fa4-86cdde87f0e2/@@download/attachment/Ren_ChIP_Library_Preparation_v090113.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
20082030
Reads aligned (%)
92.3
Duplicates removed (%)
12.0
Number of peaks
702 (qval < 1E-05)

mm9

Number of total reads
20082030
Reads aligned (%)
92.0
Duplicates removed (%)
12.1
Number of peaks
751 (qval < 1E-05)

Base call quality data from DBCLS SRA