Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

age

4 year

dev stage

child

donor ID

ENCDO000ABD

sex

female

sample type

immortalized cell line

cell line

SK-N-SH

passage number

5

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

133614832

Reads aligned (%)

35.8

Duplicates removed (%)

4.0

Number of peaks

1701 (qval < 1E-05)

hg19

Number of total reads

133614832

Reads aligned (%)

35.4

Duplicates removed (%)

6.0

Number of peaks

1291 (qval < 1E-05)