Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Neural

Cell type

SK-N-SH

Primary Tissue

Brain

Tissue Diagnosis

Neuroblastoma

Sample

age

4 year

dev stage

child

donor ID

ENCDO000ABD

sex

female

sample type

immortalized cell line

cell line

SK-N-SH

lab

Peggy Farnham, USC

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/5aaf2e58-de7c-451b-b6d7-747b82278bc3/@@download/attachment/Farnham_TF_ChIP_Library_Protocol_130201.docx.pdf

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

38323912

Reads aligned (%)

98.6

Duplicates removed (%)

6.1

Number of peaks

1735 (qval < 1E-05)

hg19

Number of total reads

38323912

Reads aligned (%)

96.3

Duplicates removed (%)

9.6

Number of peaks

1534 (qval < 1E-05)