Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Digestive tract

Cell type

HCT 116

Primary Tissue

Colon

Tissue Diagnosis

Carcinoma

Sample

age

unknown

dev stage

unknown

donor ID

ENCDO000ABE

sex

male

health state

colorectal carcinoma

sample type

immortalized cell line

cell line

HCT116

lab

Peggy Farnham, USC

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/5aaf2e58-de7c-451b-b6d7-747b82278bc3/@@download/attachment/Farnham_TF_ChIP_Library_Protocol_130201.docx.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

36969802

Reads aligned (%)

98.0

Duplicates removed (%)

6.5

Number of peaks

2044 (qval < 1E-05)

hg19

Number of total reads

36969802

Reads aligned (%)

96.2

Duplicates removed (%)

8.5

Number of peaks

1656 (qval < 1E-05)