Antigen

Antigen Class

Histone

Antigen

H3K27me3

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

age

56 year

dev stage

unknown

donor ID

ENCDO000ABB

sex

male

health state

pancreatic carcinoma

sample type

immortalized cell line

cell line

Panc1

lab

Peggy Farnham, USC

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction method: see document general protocol: https://www.encodeproject.org/documents/5aaf2e58-de7c-451b-b6d7-747b82278bc3/@@download/attachment/Farnham_TF_ChIP_Library_Protocol_130201.docx.pdf

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

29245994

Reads aligned (%)

97.8

Duplicates removed (%)

1.1

Number of peaks

196 (qval < 1E-05)

hg19

Number of total reads

29245994

Reads aligned (%)

97.4

Duplicates removed (%)

1.6

Number of peaks

230 (qval < 1E-05)