Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox17

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
KH2 ES cells
cell type
Embryonic stem cells
developmental stage
Undifferentiated
treatment
Overexpress Sox17_V5 tagged
cell line
KH2
chip antibody 1
Sox17
chip antibody manufacturer 1
R&D
chip antibody 2
V5
chip antibody manufacturer 2
Invitrogen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
24646925
Reads aligned (%)
97.5
Duplicates removed (%)
17.0
Number of peaks
874 (qval < 1E-05)

mm9

Number of total reads
24646925
Reads aligned (%)
97.4
Duplicates removed (%)
17.1
Number of peaks
914 (qval < 1E-05)

Base call quality data from DBCLS SRA