Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Others
Cell type
Adrenal Glands
MeSH Description
A pair of glands located at the cranial pole of each of the two KIDNEYS. Each adrenal gland is composed of two distinct endocrine tissues with separate embryonic origins, the ADRENAL CORTEX producing STEROIDS and the ADRENAL MEDULLA producing NEUROTRANSMITTERS.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
iron deficiency, bipolar
BIOMATERIAL_PROVIDER
Shin Lin, Stanford University
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Adrenal Gland
TISSUE_DEPOT
N/A
COLLECTION_METHOD
Autopsy
DONOR_ID
STL002
DONOR_AGE
30
DONOR_HEALTH_STATUS
iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)
DONOR_SEX
Female
DONOR_ETHNICITY
Caucasian
sample_term_id
UBERON_0002369

Sequenced DNA Library

library_name
CY97
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
17177209
Reads aligned (%)
97.3
Duplicates removed (%)
18.4
Number of peaks
299 (qval < 1E-05)

hg19

Number of total reads
17177209
Reads aligned (%)
96.3
Duplicates removed (%)
19.8
Number of peaks
269 (qval < 1E-05)

Base call quality data from DBCLS SRA