Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

source_name

testes

strain

CD1

chip antibody

Rabbit anti-H3K4me3 (Millipore 07-473)

tissue

testes

agent

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

column-based RNA-extraction. Library construction protocol not provided.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

mm10

Number of total reads

125967051

Reads aligned (%)

97.3

Duplicates removed (%)

17.5

Number of peaks

56122 (qval < 1E-05)

mm9

Number of total reads

125967051

Reads aligned (%)

97.2

Duplicates removed (%)

17.6

Number of peaks

54926 (qval < 1E-05)