SRX213859
GSM1059378: Histone mark #8: H3K4me3 (Nkx2-1-neg. tumor), rep. #1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1059378
tester-control pair
I
strain
mixed 129/B6
tissue
lung
tumor type
adenocarcinoma
nkx2-1 status
deleted
gender
male
age
4 to 7 months
chip antibody
Millipore
chip antibody catalog number
07-473

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24167308
Reads aligned (%)
95.9
Duplicates removed (%)
34.5
Number of peaks
23550 (qval < 1E-05)

mm9

Number of total reads
24167308
Reads aligned (%)
95.8
Duplicates removed (%)
34.6
Number of peaks
23587 (qval < 1E-05)

Base call quality data from DBCLS SRA