SRX213856
GSM1059375: Histone mark #5: H3K27ac (Nkx2-1-neg. tumor), rep. #1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
lung adenocarcinoma
tester-control pair
I
strain
mixed 129/B6
tissue
lung
tumor type
adenocarcinoma
nkx2-1 status
deleted
gender
male
age
4 to 7 months
chip antibody
Abcam
chip antibody catalog number
ab4729

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39340808
Reads aligned (%)
98.8
Duplicates removed (%)
15.9
Number of peaks
40561 (qval < 1E-05)

mm9

Number of total reads
39340808
Reads aligned (%)
98.7
Duplicates removed (%)
15.9
Number of peaks
40613 (qval < 1E-05)

Base call quality data from DBCLS SRA