SRX213854
GSM1059373: Histone mark #4: H3K4me3 (Nkx2-1-pos. tumor), rep. #2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1059373
tester-control pair
H
strain
mixed 129/B6
tissue
lung
tumor type
adenocarcinoma
nkx2-1 status
positive
gender
female
age
4 to 7 months
chip antibody
Millipore
chip antibody catalog number
07-473

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40812703
Reads aligned (%)
98.1
Duplicates removed (%)
37.0
Number of peaks
28262 (qval < 1E-05)

mm9

Number of total reads
40812703
Reads aligned (%)
98.0
Duplicates removed (%)
37.1
Number of peaks
28296 (qval < 1E-05)

Base call quality data from DBCLS SRA