SRX213840
GSM1059359: Transcription factor #2: Foxa1/2 (Nkx2-1-pos. tumor), rep. #2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxa1

Cell type

Cell type Class
Lung
Cell type
Lung adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1059359
tester-control pair
D
strain
mixed 129/B6
tissue
lung
tumor type
adenocarcinoma
nkx2-1 status
positive
gender
male
age
4 to 7 months
chip antibody
Santa
chip antibody catalog number
sc-6553

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28842157
Reads aligned (%)
84.4
Duplicates removed (%)
11.9
Number of peaks
10922 (qval < 1E-05)

mm9

Number of total reads
28842157
Reads aligned (%)
84.1
Duplicates removed (%)
11.8
Number of peaks
10923 (qval < 1E-05)

Base call quality data from DBCLS SRA