SRX213827
GSM1059030: Jmjd2c KD H3K9me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Jmjd2c KD mESCs
strain
129S4/SvJae
phenotype
agouti
gender
male
cell type
ESC
genotype/variation
Jmjd2c shRNA KD
chip antibody
H3K9me3 (ab8898), Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42619217
Reads aligned (%)
83.1
Duplicates removed (%)
58.9
Number of peaks
788 (qval < 1E-05)

mm9

Number of total reads
42619217
Reads aligned (%)
82.6
Duplicates removed (%)
58.9
Number of peaks
902 (qval < 1E-05)

Base call quality data from DBCLS SRA