SRX213810
GSM1059013: AntiGFP KD RNA Pol II 8WG16; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Anti-GFP KD mESCs
strain
129S4/SvJae
phenotype
agouti
gender
male
cell type
ESC
genotype/variation
Anti-GFP shRNA KD
chip antibody
RNA Pol II 8WG16 (MMS-126R), Covance

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21171059
Reads aligned (%)
72.0
Duplicates removed (%)
51.1
Number of peaks
10958 (qval < 1E-05)

mm9

Number of total reads
21171059
Reads aligned (%)
71.9
Duplicates removed (%)
51.3
Number of peaks
10983 (qval < 1E-05)

Base call quality data from DBCLS SRA