SRX213808
GSM1059011: AntiGFP KD Nanog; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nanog

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Anti-GFP KD mESCs
strain
129S4/SvJae
phenotype
agouti
gender
male
cell type
ESC
genotype/variation
Anti-GFP shRNA KD
chip antibody
Nanog (A300-397A), Bethyl Laboratories

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27065172
Reads aligned (%)
83.4
Duplicates removed (%)
34.1
Number of peaks
23652 (qval < 1E-05)

mm9

Number of total reads
27065172
Reads aligned (%)
83.2
Duplicates removed (%)
34.2
Number of peaks
23525 (qval < 1E-05)

Base call quality data from DBCLS SRA